If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ), 'gf_id' => 'HOM05D000612', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000612' ), 'data_identifier' => 'HOM05D000612', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000612', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '928', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p22350' => 'bna', 'A03p25380' => 'bna', 'A04p01200' => 'bna', 'A04p04220' => 'bna', 'A04p34050' => 'bna', 'A05p05790' => 'bna', 'A06p06860' => 'bna', 'A08p34110' => 'bna', 'A09p48770' => 'bna', 'A09p53300' => 'bna', 'A10p00270' => 'bna', 'Aa31LG10G10760' => 'aar', 'Aa31LG10G15310' => 'aar', 'Aa31LG1G11150' => 'aar', 'Aa31LG1G27250' => 'aar', 'Aa31LG1G4730' => 'aar', 'Aa31LG5G19720' => 'aar', 'Aa31LG5G370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1291' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_327.3' => 'aag', 'Actinidia00367' => 'ach', 'Actinidia00929' => 'ach', 'Actinidia02021' => 'ach', 'Actinidia04971' => 'ach', 'Actinidia10004' => 'ach', 'Actinidia12713' => 'ach', 'Actinidia13912' => 'ach', 'Actinidia14547' => 'ach', 'Actinidia19085' => 'ach', 'Actinidia26705' => 'ach', 'Actinidia27990' => 'ach', 'Actinidia29671' => 'ach', 'Actinidia33047' => 'ach', 'Actinidia33948' => 'ach', 'Actinidia38107' => 'ach', 'Ah.05g167070' => 'amhyb', 'Ah.05g176500' => 'amhyb', 'Ah.10g036690' => 'amhyb', 'Ah.12g057270' => 'amhyb', 'Ah.16g103050' => 'amhyb', 'AL1G10560' => 'aly', 'AL1G20900' => 'aly', 'AL4G37480' => 'aly', 'AL4G45010' => 'aly', 'AL5G37050' => 'aly', 'AL5G43500' => 'aly', 'Aqoxy1G00740' => 'aox', 'Aqoxy1G03515' => 'aox', 'Aqoxy3G00904' => 'aox', 'Aqoxy3G01655' => 'aox', 'Aqoxy3G03083' => 'aox', 'Aqoxy6G02597' => 'aox', 'Aqoxy7G00367' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IXS7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RB8EG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5N7T8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1R704' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8X79L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DE3F1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2WEK6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GEQ2UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8XYVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JL97TY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU3FJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV2JC2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SI0BUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFJ7H8' => 'arhy', 'AT1G01780' => 'ath', 'AT1G10200' => 'ath', 'AT2G39900' => 'ath', 'AT2G45800' => 'ath', 'AT3G55770' => 'ath', 'AT3G61230' => 'ath', 'ATR0618G384' => 'atr', 'ATR0680G181' => 'atr', 'ATR0739G106' => 'atr', 'ATR1149G124' => 'atr', 'Atru.chr12.263' => 'acertr', 'Atru.chr13.838' => 'acertr', 'Atru.chr5.2333' => 'acertr', 'Atru.chr5.485' => 'acertr', 'Atru.chr9.2253' => 'acertr', 'Atru.chr9.2418' => 'acertr', 'AUR62004324' => 'cqu', 'AUR62008273' => 'cqu', 'AUR62012196' => 'cqu', 'AUR62017249' => 'cqu', 'AUR62022471' => 'cqu', 'AUR62022829' => 'cqu', 'AUR62031033' => 'cqu', 'AUR62033338' => 'cqu', 'AUR62037417' => 'cqu', 'BcaB01g00063' => 'bca', 'BcaB01g03251' => 'bca', 'BcaB01g03578' => 'bca', 'BcaB02g07384' => 'bca', 'BcaB02g08399' => 'bca', 'BcaB02g09005' => 'bca', 'BcaB02g09072' => 'bca', 'BcaB03g13613' => 'bca', 'BcaB07g32202' => 'bca', 'BcaC01g05104' => 'bca', 'BcaC01g05455' => 'bca', 'BcaC02g07055' => 'bca', 'BcaC02g09790' => 'bca', 'BcaC02g10215' => 'bca', 'BcaC02g12124' => 'bca', 'BcaC02g12180' => 'bca', 'BcaC07g38544' => 'bca', 'BcaC07g39904' => 'bca', 'BcaC07g40627' => 'bca', 'BcaC07g42664' => 'bca', 'BcaC08g45111' => 'bca', 'BolC2t07205H' => 'bol', 'BolC3t15035H' => 'bol', 'BolC3t15378H' => 'bol', 'BolC4t22294H' => 'bol', 'BolC4t22376H' => 'bol', 'BolC4t24693H' => 'bol', 'BolC4t25139H' => 'bol', 'BolC4t28683H' => 'bol', 'BolC5t28818H' => 'bol', 'BolC5t29584H' => 'bol', 'BolC6t37897H' => 'bol', 'BolC8t48986H' => 'bol', 'BolC8t50731H' => 'bol', 'BolC8t51192H' => 'bol', 'BolC8t52899H' => 'bol', 'BolC9t54736H' => 'bol', 'BraA03t11744Z' => 'bra', 'BraA04t15838Z' => 'bra', 'BraA04t16138Z' => 'bra', 'BraA04t18866Z' => 'bra', 'BraA05t19545Z' => 'bra', 'BraA05t19619Z' => 'bra', 'BraA06t23900Z' => 'bra', 'BraA08t35323Z' => 'bra', 'BraA09t40330Z' => 'bra', 'BraA09t40754Z' => 'bra', 'BraA09t42262Z' => 'bra', 'BraA10t42304Z' => 'bra', 'C03p26490' => 'bna', 'C03p30290' => 'bna', 'C04p06730' => 'bna', 'C04p31480' => 'bna', 'C04p36580' => 'bna', 'C04p71850' => 'bna', 'C05p00280' => 'bna', 'C05p08340' => 'bna', 'C06p27270' => 'bna', 'C08p13510' => 'bna', 'C08p31100' => 'bna', 'C08p36100' => 'bna', 'C08p53860' => 'bna', 'CAN.G1153.5' => 'can', 'CAN.G116.4' => 'can', 'CAN.G116.5' => 'can', 'CAN.G2099.4' => 'can', 'CAN.G503.13' => 'can', 'CAN.G628.69' => 'can', 'CAN.G724.30' => 'can', 'CAN.G78.52' => 'can', 'CAN.G792.88' => 'can', 'CAN.G793.5' => 'can', 'CAN.G859.12' => 'can', 'CAN.G886.2' => 'can', 'CAN.G9.19' => 'can', 'CAN.G975.20' => 'can', 'CANSAT21G1626' => 'cansat', 'CANSAT25G1050' => 'cansat', 'CANSAT25G1091' => 'cansat', 'CANSAT25G2128' => 'cansat', 'CANSAT25G2300' => 'cansat', 'CANSAT56G2208' => 'cansat', 'CANSAT56G3934' => 'cansat', 'CANSAT80G0322' => 'cansat', 'CARHR000540' => 'chi', 'CARHR010300' => 'chi', 'CARHR134820' => 'chi', 'CARHR141070' => 'chi', 'CARHR165880' => 'chi', 'CARHR171530' => 'chi', 'Carub.0001s0043' => 'cru', 'Carub.0001s0961' => 'cru', 'Carub.0004s2203' => 'cru', 'Carub.0004s2850' => 'cru', 'Carub.0005s2256' => 'cru', 'Carub.0005s2788' => 'cru', 'Ca_02938_v3' => 'car', 'Ca_07894_v3' => 'car', 'Ca_13214_v3' => 'car', 'Ca_15899_v3' => 'car', 'Ca_16205_v3' => 'car', 'Ca_17140_v3' => 'car', 'Ca_17549_v3' => 'car', 'Ca_21896_v3' => 'car', 'Ca_23663_v3' => 'car', 'Ca_30476_v3' => 'car', 'CBR_g19916' => 'cbr', 'Cc02_g07000' => 'ccan', 'Cc02_g19900' => 'ccan', 'Cc02_g37690' => 'ccan', 'Cc04_g13070' => 'ccan', 'Cc08_g14370' => 'ccan', 'Cc10_g05010' => 'ccan', 'CDE03G0269' => 'cde', 'CDE04G3574' => 'cde', 'CDE05G1261' => 'cde', 'CDE05G1378' => 'cde', 'CDE05G2365' => 'cde', 'CDE08G1535' => 'cde', 'Cfa003953' => 'cfa', 'Cfa004666' => 'cfa', 'Cfa012143' => 'cfa', 'Cfa013772' => 'cfa', 'Cfa019079' => 'cfa', 'Ciclev10002540m.g' => 'ccl', 'Ciclev10003160m.g' => 'ccl', 'Ciclev10003359m.g' => 'ccl', 'Ciclev10003747m.g' => 'ccl', 'Ciclev10022413m.g' => 'ccl', 'Ciclev10022448m.g' => 'ccl', 'Ciclev10023761m.g' => 'ccl', 'Ciclev10029316m.g' => 'ccl', 'Ciclev10030332m.g' => 'ccl', 'Ciclev10032838m.g' => 'ccl', 'Ciclev10033840m.g' => 'ccl', 'CiPaw.01G057900' => 'cil', 'CiPaw.01G295000' => 'cil', 'CiPaw.02G028600' => 'cil', 'CiPaw.02G189300' => 'cil', 'CiPaw.05G018400' => 'cil', 'CiPaw.07G174300' => 'cil', 'CiPaw.11G030700' => 'cil', 'CiPaw.12G024000' => 'cil', 'ClCG02G007060' => 'cla', 'ClCG05G001690' => 'cla', 'ClCG05G001730' => 'cla', 'ClCG05G020650' => 'cla', 'ClCG06G016780' => 'cla', 'ClCG07G003880' => 'cla', 'ClCG08G016530' => 'cla', 'ClCG11G006380' => 'cla', 'COL.COLO4_12677' => 'col', 'COL.COLO4_24758' => 'col', 'COL.COLO4_25615' => 'col', 'COL.COLO4_28498' => 'col', 'COL.COLO4_32504' => 'col', 'COL.COLO4_34427' => 'col', 'COL.COLO4_35075' => 'col', 'Cpa.g.c43710' => 'cpa', 'Cpa.g.sc106.42' => 'cpa', 'Cpa.g.sc110.28' => 'cpa', 'Cpa.g.sc142.32' => 'cpa', 'Cpa.g.sc18.225' => 'cpa', 'Cpa.g.sc19.227' => 'cpa', 'CsaV3_1G001740' => 'csa', 'CsaV3_2G026080' => 'csa', 'CsaV3_3G009070' => 'csa', 'CsaV3_3G009120' => 'csa', 'CsaV3_4G035090' => 'csa', 'CsaV3_5G008830' => 'csa', 'CsaV3_6G001620' => 'csa', 'CsaV3_7G007780' => 'csa', 'CSS0000639' => 'camsi', 'CSS0001658' => 'camsi', 'CSS0002359' => 'camsi', 'CSS0007206' => 'camsi', 'CSS0008308' => 'camsi', 'CSS0015500' => 'camsi', 'CSS0016373' => 'camsi', 'CSS0016576' => 'camsi', 'CSS0025673' => 'camsi', 'CSS0028954' => 'camsi', 'CSS0031099' => 'camsi', 'CSS0037278' => 'camsi', 'CSS0040071' => 'camsi', 'CSS0041900' => 'camsi', 'CSS0043578' => 'camsi', 'CSS0049108' => 'camsi', 'DCAR_000598' => 'dca', 'DCAR_004648' => 'dca', 'DCAR_008602' => 'dca', 'DCAR_011221' => 'dca', 'DCAR_011781' => 'dca', 'DCAR_015942' => 'dca', 'DCAR_016501' => 'dca', 'DCAR_020052' => 'dca', 'DCAR_021560' => 'dca', 'DCAR_021952' => 'dca', 'DCAR_025142' => 'dca', 'DCAR_026117' => 'dca', 'DCAR_026947' => 'dca', 'DCAR_027557' => 'dca', 'Dinv09170' => 'din', 'Dinv15811' => 'din', 'Dinv20689' => 'din', 'Dinv20941' => 'din', 'Dinv21003' => 'din', 'Dinv32455' => 'din', 'Dinv34433' => 'din', 'Dinv37664' => 'din', 'Dinv38971' => 'din', 'Dinv39218' => 'din', 'Dinv43785' => 'din', 'Dinv44951' => 'din', 'Duzib041G0553' => 'dzi', 'Duzib052G0307' => 'dzi', 'Duzib068G0451' => 'dzi', 'Duzib068G1092' => 'dzi', 'Duzib084G1050' => 'dzi', 'Duzib093G0095' => 'dzi', 'Duzib114G0506' => 'dzi', 'Duzib128G0088' => 'dzi', 'Duzib132G0912' => 'dzi', 'Duzib133G1337' => 'dzi', 'Duzib138G0971' => 'dzi', 'Duzib205G0896' => 'dzi', 'Duzib205G1687' => 'dzi', 'Duzib248G0008' => 'dzi', 'Duzib268G0587' => 'dzi', 'ECA234G1575' => 'eca', 'ECA234G2826' => 'eca', 'ECA236G0878' => 'eca', 'ECA238G3156' => 'eca', 'ECA240G1831' => 'eca', 'ECA246G3442' => 'eca', 'ECA247G0762' => 'eca', 'EL10Ac1g00537' => 'bvu', 'EL10Ac1g02372' => 'bvu', 'EL10Ac2g04776' => 'bvu', 'EL10Ac5g10818' => 'bvu', 'EL10Ac5g12771' => 'bvu', 'Eucgr.B00345' => 'egr', 'Eucgr.D01873' => 'egr', 'Eucgr.D02268' => 'egr', 'Eucgr.E00179' => 'egr', 'Eucgr.F00087' => 'egr', 'Eucgr.F02243' => 'egr', 'Eucgr.G03023' => 'egr', 'Eucgr.I01055' => 'egr', 'Eucgr.K02874' => 'egr', 'FAN01G0861' => 'fan', 'FAN01G2559' => 'fan', 'FAN03G0168' => 'fan', 'FAN03G0877' => 'fan', 'FAN03G1233' => 'fan', 'FAN04G1039' => 'fan', 'FAN04G1230' => 'fan', 'FAN06G0803' => 'fan', 'FAN06G1606' => 'fan', 'FAN06G2099' => 'fan', 'FAN06G2575' => 'fan', 'FAN08G1691' => 'fan', 'FAN08G2114' => 'fan', 'FAN10G0041' => 'fan', 'FAN10G4101' => 'fan', 'FAN13G0183' => 'fan', 'FAN13G2231' => 'fan', 'FAN15G0106' => 'fan', 'FAN15G1115' => 'fan', 'FAN18G2578' => 'fan', 'FAN18G2935' => 'fan', 'FAN20G0536' => 'fan', 'FAN20G3200' => 'fan', 'FAN24G2344' => 'fan', 'FAN24G3297' => 'fan', 'FAN27G0891' => 'fan', 'FvH4_2g03760' => 'fve', 'FvH4_2g32970' => 'fve', 'FvH4_5g01960' => 'fve', 'FvH4_5g16510' => 'fve', 'FvH4_7g13840' => 'fve', 'FvH4_7g23860' => 'fve', 'Glyma.02G253700' => 'gma', 'Glyma.03G013900' => 'gma', 'Glyma.04G046200' => 'gma', 'Glyma.04G179800' => 'gma', 'Glyma.05G034700' => 'gma', 'Glyma.05G205800' => 'gma', 'Glyma.06G047000' => 'gma', 'Glyma.06G185000' => 'gma', 'Glyma.07G073600' => 'gma', 'Glyma.08G012700' => 'gma', 'Glyma.10G256600' => 'gma', 'Glyma.11G226400' => 'gma', 'Glyma.14G062700' => 'gma', 'Glyma.14G089024' => 'gma', 'Glyma.17G092600' => 'gma', 'Glyma.17G234700' => 'gma', 'Glyma.18G030900' => 'gma', 'Glyma.18G230400' => 'gma', 'Gohir.1Z049329' => 'ghi', 'Gohir.1Z049358' => 'ghi', 'Gohir.A03G015500' => 'ghi', 'Gohir.A03G182100' => 'ghi', 'Gohir.A04G118300' => 'ghi', 'Gohir.A05G303600' => 'ghi', 'Gohir.A06G024400' => 'ghi', 'Gohir.A06G164800' => 'ghi', 'Gohir.A08G032850' => 'ghi', 'Gohir.A08G130100' => 'ghi', 'Gohir.A08G180100' => 'ghi', 'Gohir.A10G228700' => 'ghi', 'Gohir.A11G022000' => 'ghi', 'Gohir.A11G087000' => 'ghi', 'Gohir.A12G105100' => 'ghi', 'Gohir.A12G226700' => 'ghi', 'Gohir.A12G276340' => 'ghi', 'Gohir.A13G016700' => 'ghi', 'Gohir.D02G203800' => 'ghi', 'Gohir.D03G152600' => 'ghi', 'Gohir.D04G160000' => 'ghi', 'Gohir.D05G302650' => 'ghi', 'Gohir.D06G021500' => 'ghi', 'Gohir.D06G170300' => 'ghi', 'Gohir.D08G043650' => 'ghi', 'Gohir.D08G151500' => 'ghi', 'Gohir.D10G242700' => 'ghi', 'Gohir.D11G021700' => 'ghi', 'Gohir.D11G091400' => 'ghi', 'Gohir.D12G109000' => 'ghi', 'Gohir.D12G229100' => 'ghi', 'Gohir.D12G277100' => 'ghi', 'Gohir.D13G017800' => 'ghi', 'Gorai.003G160200' => 'gra', 'Gorai.004G042300' => 'gra', 'Gorai.004G157300' => 'gra', 'Gorai.004G209700' => 'gra', 'Gorai.005G230900' => 'gra', 'Gorai.007G023100' => 'gra', 'Gorai.007G097400' => 'gra', 'Gorai.008G118100' => 'gra', 'Gorai.008G245300' => 'gra', 'Gorai.008G297600' => 'gra', 'Gorai.009G321800' => 'gra', 'Gorai.010G026100' => 'gra', 'Gorai.010G199200' => 'gra', 'Gorai.011G279100' => 'gra', 'Gorai.012G147400' => 'gra', 'Gorai.013G019800' => 'gra', 'GSVIVG01007812001' => 'vvi', 'GSVIVG01009338001' => 'vvi', 'GSVIVG01016382001' => 'vvi', 'GSVIVG01019807001' => 'vvi', 'GSVIVG01026849001' => 'vvi', 'GSVIVG01037819001' => 'vvi', 'HanXRQChr03g0093491' => 'han', 'HanXRQChr04g0121641' => 'han', 'HanXRQChr05g0155501' => 'han', 'HanXRQChr06g0165781' => 'han', 'HanXRQChr07g0202281' => 'han', 'HanXRQChr10g0290021' => 'han', 'HanXRQChr10g0298601' => 'han', 'HanXRQChr13g0416491' => 'han', 'HanXRQChr16g0523071' => 'han', 'HanXRQChr17g0533351' => 'han', 'HanXRQChr17g0535481' => 'han', 'HanXRQChr17g0561531' => 'han', 'Haze_07449' => 'cav', 'Haze_08892' => 'cav', 'Haze_10265' => 'cav', 'Haze_15466' => 'cav', 'Haze_17174' => 'cav', 'Haze_22430' => 'cav', 'Hma1.2p1_0002F.1_g002690' => 'hma', 'Hma1.2p1_0026F.1_g016910' => 'hma', 'Hma1.2p1_0819F.1_g223640' => 'hma', 'Hma1.2p1_1059F.1_g253020' => 'hma', 'Hma1.2p1_1943F.1_g308480' => 'hma', 'Hma1.2p1_2497F.1_g323340' => 'hma', 'HPP92_004977' => 'vpl', 'HPP92_008434' => 'vpl', 'HPP92_008444' => 'vpl', 'HPP92_008459' => 'vpl', 'HPP92_010839' => 'vpl', 'HPP92_015506' => 'vpl', 'HPP92_020409' => 'vpl', 'HPP92_023658' => 'vpl', 'HPP92_025483' => 'vpl', 'Hund02714' => 'sun', 'Hund05296' => 'sun', 'Hund13826' => 'sun', 'Hund15987' => 'sun', 'Lalb_Chr01g0021041' => 'lal', 'Lalb_Chr02g0144961' => 'lal', 'Lalb_Chr04g0256751' => 'lal', 'Lalb_Chr05g0224921' => 'lal', 'Lalb_Chr06g0165071' => 'lal', 'Lalb_Chr08g0245561' => 'lal', 'Lalb_Chr09g0333301' => 'lal', 'Lalb_Chr10g0097201' => 'lal', 'Lalb_Chr12g0201461' => 'lal', 'Lalb_Chr14g0368161' => 'lal', 'Lalb_Chr15g0084351' => 'lal', 'Lalb_Chr17g0339851' => 'lal', 'Lalb_Chr18g0052771' => 'lal', 'Lalb_Chr19g0127001' => 'lal', 'Lalb_Chr19g0127011' => 'lal', 'Lalb_Chr20g0116641' => 'lal', 'Lalb_Chr20g0116651' => 'lal', 'Lalb_Chr21g0308021' => 'lal', 'Lalb_Chr21g0308031' => 'lal', 'Lalb_Chr22g0355681' => 'lal', 'Lalb_Chr24g0399481' => 'lal', 'Lj1g0010133' => 'lja', 'Lj1g0023505' => 'lja', 'Lj2A187T87' => 'lonja', 'Lj2A187T88' => 'lonja', 'Lj3g0008896' => 'lja', 'Lj4A757T33' => 'lonja', 'Lj4g0026875' => 'lja', 'Lj5A121G97' => 'lonja', 'Lj5C219T5' => 'lonja', 'Lj5g0005515' => 'lja', 'Lj5g0021325' => 'lja', 'Lj6g0002601' => 'lja', 'Lj7C516T4' => 'lonja', 'Lj8A73G46' => 'lonja', 'Lj9A580T62' => 'lonja', 'Lj9C328T4' => 'lonja', 'Lj9C452G9' => 'lonja', 'Lsat_1_v5_gn_1_1361' => 'lsa', 'Lsat_1_v5_gn_2_120401' => 'lsa', 'Lsat_1_v5_gn_3_7641' => 'lsa', 'Lsat_1_v5_gn_4_36461' => 'lsa', 'Lsat_1_v5_gn_5_113881' => 'lsa', 'Lsat_1_v5_gn_5_16880' => 'lsa', 'Lsat_1_v5_gn_6_87140' => 'lsa', 'Lsat_1_v5_gn_7_5181' => 'lsa', 'Lsat_1_v5_gn_8_12560' => 'lsa', 'Manes.01G064100' => 'mes', 'Manes.01G259850' => 'mes', 'Manes.02G024100' => 'mes', 'Manes.02G073400' => 'mes', 'Manes.05G037300' => 'mes', 'Manes.06G101900' => 'mes', 'Manes.07G124400' => 'mes', 'Manes.10G018600' => 'mes', 'Manes.10G082500' => 'mes', 'Manes.14G069400' => 'mes', 'Manes.18G047000' => 'mes', 'Mapoly0080s0053' => 'mpo', 'MBI05_g19641_MAGBIO' => 'mbi', 'MBI05_g34806_MAGBIO' => 'mbi', 'MBI05_g36638_MAGBIO' => 'mbi', 'MBI11_g46996_MAGBIO' => 'mbi', 'MBI14_g12606_MAGBIO' => 'mbi', 'MBI17_g08178_MAGBIO' => 'mbi', 'MBI18_g09766_MAGBIO' => 'mbi', 'MCO04G084' => 'mco', 'MCO15G173' => 'mco', 'MD01G1054500' => 'mdo', 'MD01G1145700' => 'mdo', 'MD05G1101500' => 'mdo', 'MD06G1078000' => 'mdo', 'MD06G1178800' => 'mdo', 'MD07G1140900' => 'mdo', 'MD07G1212800' => 'mdo', 'MD08G1081300' => 'mdo', 'MD08G1081400' => 'mdo', 'MD14G1098800' => 'mdo', 'MD14G1185200' => 'mdo', 'MD15G1068200' => 'mdo', 'Medtr1g017950' => 'mtr', 'Medtr1g106100' => 'mtr', 'Medtr3g070033' => 'mtr', 'Medtr3g070050' => 'mtr', 'Medtr4g106800' => 'mtr', 'Medtr7g076720' => 'mtr', 'Medtr8g031490' => 'mtr', 'Medtr8g097300' => 'mtr', 'MELO3C006128.2' => 'cme', 'MELO3C006132.2' => 'cme', 'MELO3C008273.2' => 'cme', 'MELO3C010801.2' => 'cme', 'MELO3C016823.2' => 'cme', 'MELO3C017114.2' => 'cme', 'MELO3C018524.2' => 'cme', 'MELO3C025143.2' => 'cme', 'Migut.A00791' => 'egut', 'Migut.B01725' => 'egut', 'Migut.C00483' => 'egut', 'Migut.D01787' => 'egut', 'Migut.E01111' => 'egut', 'Migut.F00710' => 'egut', 'Migut.I00047' => 'egut', 'Migut.N01130' => 'egut', 'Migut.N01428' => 'egut', 'Migut.N02785' => 'egut', 'MSTRG.11998' => 'ama', 'MSTRG.17251' => 'ama', 'MSTRG.20813' => 'ama', 'MSTRG.24377' => 'ama', 'MSTRG.25033' => 'ama', 'MSTRG.27352' => 'ama', 'MSTRG.27765' => 'ama', 'MSTRG.28214' => 'ama', 'MSTRG.4381' => 'ama', 'MSTRG.8976' => 'ama', 'MSTRG.9668' => 'ama', 'Nitab4.5_0000003g0370' => 'nta', 'Nitab4.5_0000088g0070' => 'nta', 'Nitab4.5_0000278g0150' => 'nta', 'Nitab4.5_0000386g0110' => 'nta', 'Nitab4.5_0000497g0200' => 'nta', 'Nitab4.5_0001200g0210' => 'nta', 'Nitab4.5_0001356g0080' => 'nta', 'Nitab4.5_0001422g0090' => 'nta', 'Nitab4.5_0001702g0060' => 'nta', 'Nitab4.5_0002160g0060' => 'nta', 'Nitab4.5_0002314g0060' => 'nta', 'Nitab4.5_0003725g0090' => 'nta', 'Nitab4.5_0003953g0010' => 'nta', 'Nitab4.5_0004032g0030' => 'nta', 'Nitab4.5_0004338g0030' => 'nta', 'Nitab4.5_0004495g0010' => 'nta', 'Nitab4.5_0005802g0010' => 'nta', 'Nitab4.5_0005850g0010' => 'nta', 'Nitab4.5_0007064g0030' => 'nta', 'Nitab4.5_0008050g0050' => 'nta', 'Nitab4.5_0008905g0040' => 'nta', 'Nitab4.5_0009210g0050' => 'nta', 'Nitab4.5_0009569g0010' => 'nta', 'Nitab4.5_0009908g0020' => 'nta', 'Nn1g01439' => 'nnu', 'Nn1g04544' => 'nnu', 'Nn2g11341' => 'nnu', 'Nn3g16979' => 'nnu', 'Nn4g22887' => 'nnu', 'Nn5g30608' => 'nnu', 'Nn6g33526' => 'nnu', 'Oeu004523.1' => 'oeu', 'Oeu004524.1' => 'oeu', 'Oeu009184.1' => 'oeu', 'Oeu009668.1' => 'oeu', 'Oeu014672.1' => 'oeu', 'Oeu016349.1' => 'oeu', 'Oeu016578.1' => 'oeu', 'Oeu032675.3' => 'oeu', 'Oeu040431.1' => 'oeu', 'Oeu040432.1' => 'oeu', 'Oeu041581.1' => 'oeu', 'Oeu053292.1' => 'oeu', 'Oeu053624.1' => 'oeu', 'Oeu055826.1' => 'oeu', 'Oeu058620.1' => 'oeu', 'Oeu059750.1' => 'oeu', 'Os02g0641000' => 'osa', 'Os03g0266100' => 'osa', 'Os04g0532500' => 'osa', 'Os06g0237300' => 'osa', 'Os10g0503100' => 'osa', 'Os12g0510900' => 'osa', 'Peaxi162Scf00008g02027' => 'pax', 'Peaxi162Scf00017g00244' => 'pax', 'Peaxi162Scf00081g02226' => 'pax', 'Peaxi162Scf00102g01536' => 'pax', 'Peaxi162Scf00152g00431' => 'pax', 'Peaxi162Scf00160g00516' => 'pax', 'Peaxi162Scf00191g01421' => 'pax', 'Peaxi162Scf00401g00026' => 'pax', 'Peaxi162Scf00689g00333' => 'pax', 'Peaxi162Scf00714g00020' => 'pax', 'Peaxi162Scf00957g00112' => 'pax', 'PGR031G0019' => 'pgr', 'PGR031G0646' => 'pgr', 'PGR031G3306' => 'pgr', 'PGR042G2812' => 'pgr', 'PGR044G1496' => 'pgr', 'PGR044G1664' => 'pgr', 'PGR083G2580' => 'pgr', 'PGR142G1663' => 'pgr', 'PGR142G2546' => 'pgr', 'PGSC0003DMG400000155' => 'stu', 'PGSC0003DMG400003062' => 'stu', 'PGSC0003DMG400005775' => 'stu', 'PGSC0003DMG400010269' => 'stu', 'PGSC0003DMG400010609' => 'stu', 'PGSC0003DMG400011558' => 'stu', 'PGSC0003DMG400021643' => 'stu', 'PGSC0003DMG400022943' => 'stu', 'PGSC0003DMG400024481' => 'stu', 'PGSC0003DMG400027131' => 'stu', 'PGSC0003DMG400033056' => 'stu', 'Phvul.001G028200' => 'pvu', 'Phvul.001G239700' => 'pvu', 'Phvul.002G287604' => 'pvu', 'Phvul.003G197600' => 'pvu', 'Phvul.007G046100' => 'pvu', 'Phvul.008G067500' => 'pvu', 'Phvul.009G072200' => 'pvu', 'Phvul.009G181200' => 'pvu', 'Phvul.010G095700' => 'pvu', 'Potri.001G107100' => 'ptr', 'Potri.001G292900' => 'ptr', 'Potri.002G118000' => 'ptr', 'Potri.002G157300' => 'ptr', 'Potri.003G124300' => 'ptr', 'Potri.008G063600' => 'ptr', 'Potri.009G087200' => 'ptr', 'Potri.010G193800' => 'ptr', 'Potri.012G077200' => 'ptr', 'Potri.014G015600' => 'ptr', 'Potri.014G080900' => 'ptr', 'Potri.015G072400' => 'ptr', 'Pp3c11_18380' => 'ppa', 'Pp3c17_20150' => 'ppa', 'Pp3c7_3100' => 'ppa', 'Prupe.1G422200' => 'ppe', 'Prupe.2G164200' => 'ppe', 'Prupe.2G245000' => 'ppe', 'Prupe.5G095800' => 'ppe', 'Prupe.5G177900' => 'ppe', 'Prupe.8G146000' => 'ppe', 'Psat3g110760' => 'psa', 'Psat4g056160' => 'psa', 'Psat4g153720' => 'psa', 'Psat5g127480' => 'psa', 'Psat6g018080' => 'psa', 'Psat6g213760' => 'psa', 'Psat7g035600' => 'psa', 'PSO063G4036' => 'pso', 'PSO063G7205' => 'pso', 'PSO384G3970' => 'pso', 'PSO478G2824' => 'pso', 'PSO541G0238' => 'pso', 'PSO585G0010' => 'pso', 'PSO675G8883' => 'pso', 'PSO782G2440' => 'pso', 'PSO782G4496' => 'pso', 'PSO832G1780' => 'pso', 'QL08p049518' => 'qlo', 'QL08p062476' => 'qlo', 'QL10p013408' => 'qlo', 'QL11p030259' => 'qlo', 'QL12p018060' => 'qlo', 'QL12p038173' => 'qlo', 'RcHm_v2.0_Chr1g0354051' => 'rch', 'RcHm_v2.0_Chr1g0369211' => 'rch', 'RcHm_v2.0_Chr6g0252741' => 'rch', 'RcHm_v2.0_Chr6g0309731' => 'rch', 'RcHm_v2.0_Chr7g0179581' => 'rch', 'RcHm_v2.0_Chr7g0198411' => 'rch', 'Rhsim01G0152200' => 'rsi', 'Rhsim05G0091400' => 'rsi', 'Rhsim07G0017900' => 'rsi', 'Rhsim07G0092000' => 'rsi', 'Rhsim07G0219500' => 'rsi', 'Rhsim08G0168800' => 'rsi', 'Rhsim09G0171600' => 'rsi', 'Sabra02G0092700' => 'sbr', 'Sabra02G0124900' => 'sbr', 'Sabra03G0087900' => 'sbr', 'Sabra08G0046900' => 'sbr', 'Sabra10G0149200' => 'sbr', 'Sabra14G0009400' => 'sbr', 'Sabra14G0058800' => 'sbr', 'Sabra15G0096900' => 'sbr', 'Sabra16G0182500' => 'sbr', 'Sabra18G0017800' => 'sbr', 'SalBow1G8522' => 'sbo', 'SalBow2G1372' => 'sbo', 'SalBow2G2994' => 'sbo', 'SalBow3G1630' => 'sbo', 'SalBow3G3063' => 'sbo', 'SalBow5G2180' => 'sbo', 'SalBow5G4257' => 'sbo', 'SalBow5G4845' => 'sbo', 'SalBow5G5076' => 'sbo', 'SalBow6G2439' => 'sbo', 'SalBow6G5775' => 'sbo', 'SalBow6G6966' => 'sbo', 'SalBow7G4490' => 'sbo', 'Sc02g0002080' => 'sci', 'Sc07g0009650' => 'sci', 'Sc10g0002150' => 'sci', 'Sc12g0005550' => 'sci', 'Sc15g0005650' => 'sci', 'Sc22g0000200' => 'sci', 'Sc26g0000990' => 'sci', 'Sed0002063' => 'sed', 'Sed0003112' => 'sed', 'Sed0005233' => 'sed', 'Sed0005614' => 'sed', 'Sed0010528' => 'sed', 'Sed0011604' => 'sed', 'Sed0013083' => 'sed', 'Sed0014643' => 'sed', 'Sed0015049' => 'sed', 'Sed0016356' => 'sed', 'Sed0018354' => 'sed', 'Sed0019780' => 'sed', 'Sed0020628' => 'sed', 'Sed0022168' => 'sed', 'Sed0023989' => 'sed', 'SEGI_29751' => 'sgi', 'SEGI_35905' => 'sgi', 'SGA_v2.0_scaffold11G05656' => 'sas', 'SGA_v2.0_scaffold144G35959' => 'sas', 'SGA_v2.0_scaffold152G36806' => 'sas', 'SGA_v2.0_scaffold219G42535' => 'sas', 'SGA_v2.0_scaffold221G42709' => 'sas', 'SGA_v2.0_scaffold2G01059' => 'sas', 'SGA_v2.0_scaffold43G16442' => 'sas', 'SGA_v2.0_scaffold467G52024' => 'sas', 'SHI13470' => 'shi', 'SHI54743' => 'shi', 'SMO114G0128' => 'smo', 'SMO353G0337' => 'smo', 'SMO367G0448' => 'smo', 'Solyc01g094320.3' => 'sly', 'Solyc03g114000.3' => 'sly', 'Solyc04g077780.3' => 'sly', 'Solyc05g049870.3' => 'sly', 'Solyc05g052780.4' => 'sly', 'Solyc06g071310.4' => 'sly', 'Solyc08g007940.4' => 'sly', 'Solyc08g080740.3' => 'sly', 'Solyc10g017520.3' => 'sly', 'Solyc11g044740.2' => 'sly', 'Solyc12g088320.2' => 'sly', 'Sopen01g038110' => 'spe', 'Sopen03g033050' => 'spe', 'Sopen04g031390' => 'spe', 'Sopen05g028200' => 'spe', 'Sopen05g031290' => 'spe', 'Sopen06g027610' => 'spe', 'Sopen08g003830' => 'spe', 'Sopen08g029050' => 'spe', 'Sopen10g006330' => 'spe', 'Sopen11g020250' => 'spe', 'Sopen12g030320' => 'spe', 'Sp1g00510' => 'spa', 'Sp1g08820' => 'spa', 'Sp4g22210' => 'spa', 'Sp4g27870' => 'spa', 'Sp5g02140' => 'spa', 'Sp5g06710' => 'spa', 'TAR369G0421' => 'tar', 'TAR371G0291' => 'tar', 'TAR374G1388' => 'tar', 'TAR374G1572' => 'tar', 'TAR375G0899' => 'tar', 'TAR376G0251' => 'tar', 'TAR381G0042' => 'tar', 'TAR381G1289' => 'tar', 'TAR622G0723' => 'tar', 'TAR622G1308' => 'tar', 'TAR623G0336' => 'tar', 'TAR625G0104' => 'tar', 'TAR629G2347' => 'tar', 'TAR633G0619' => 'tar', 'TAR636G1442' => 'tar', 'THA.LOC104801447' => 'tha', 'THA.LOC104802021' => 'tha', 'THA.LOC104810054' => 'tha', 'THA.LOC104816758' => 'tha', 'THA.LOC104817283' => 'tha', 'THA.LOC104819915' => 'tha', 'THA.LOC104824292' => 'tha', 'Thecc.01G193600' => 'tca', 'Thecc.01G363200' => 'tca', 'Thecc.02G117900' => 'tca', 'Thecc.03G006000' => 'tca', 'Thecc.03G275400' => 'tca', 'Thecc.08G088100' => 'tca', 'Thecc.10G027400' => 'tca', 'Thhalv10001618m.g' => 'esa', 'Thhalv10006235m.g' => 'esa', 'Thhalv10008789m.g' => 'esa', 'Thhalv10008856m.g' => 'esa', 'Thhalv10010740m.g' => 'esa', 'Thhalv10017249m.g' => 'esa', 'TPR.G12779' => 'tpr', 'TPR.G13118' => 'tpr', 'TPR.G21141' => 'tpr', 'TPR.G29812' => 'tpr', 'TPR.G33679' => 'tpr', 'TPR.G37459' => 'tpr', 'TPR.G37798' => 'tpr', 'TPR.G37835' => 'tpr', 'TPR.G4386' => 'tpr', 'TWI09G0079' => 'twi', 'TWI12G0665' => 'twi', 'TWI12G0931' => 'twi', 'TWI14G0934' => 'twi', 'TWI15G0195' => 'twi', 'TWI15G0688' => 'twi', 'TWI23G0752' => 'twi', 'TWI56G1354' => 'twi', 'TWI59G0364' => 'twi', 'TWI59G1230' => 'twi', 'TWI60G1016' => 'twi', 'TWI73G0009' => 'twi', 'TWI81G0180' => 'twi', 'unitig_0.g1994' => 'ugi', 'unitig_26.g9732' => 'ugi', 'unitig_578.g16151' => 'ugi', 'unitig_748.g7108' => 'ugi', 'unitig_749.g13768' => 'ugi', 'unitig_8.g4876' => 'ugi', 'vmacro07001' => 'vma', 'vmacro10068' => 'vma', 'vmacro13306' => 'vma', 'vmacro13945' => 'vma', 'vmacro16593' => 'vma', 'vmacro19363' => 'vma', 'vmacro19534' => 'vma', 'vmacro20954' => 'vma', 'vmacro22050' => 'vma', 'VMungo0251G1320' => 'vmu', 'VMungo0331G0750' => 'vmu', 'VMungo0647G2325' => 'vmu', 'VMungo0720G2406' => 'vmu', 'VMungo1309G0375' => 'vmu', 'VMungo1309G0509' => 'vmu', 'VMungo1383G0502' => 'vmu', 'VMungo1383G1733' => 'vmu', 'Zm00001eb011840' => 'zma', 'Zm00001eb075650' => 'zma', 'Zm00001eb137920' => 'zma', 'Zm00001eb185900' => 'zma', 'Zm00001eb248550' => 'zma', 'Zm00001eb264630' => 'zma', 'Zm00001eb279900' => 'zma', 'Zm00001eb427340' => 'zma', 'Zm00001eb442840' => 'zma' ) $gf_id = 'HOM05D000612' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000612' ) $data_identifier = 'HOM05D000612' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 15, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 14, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 11, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 8, 'camsi' => (int) 16, 'dca' => (int) 14, 'din' => (int) 12, 'dzi' => (int) 15, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 9, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 18, 'ghi' => (int) 33, 'gra' => (int) 16, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 4, 'lal' => (int) 21, 'lja' => (int) 7, 'lonja' => (int) 10, 'lsa' => (int) 9, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 11, 'nta' => (int) 24, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 6, 'pax' => (int) 11, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 13, 'sci' => (int) 7, 'sed' => (int) 15, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 15, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 6, 'vma' => (int) 9, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb442840' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1